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ToGMAL: Taxonomy of Generative Model Apparent Limitations

📚 Complete Documentation Index

Welcome to ToGMAL! This index will help you navigate all available documentation.

🚀 Getting Started (Start Here!)

Document Description When to Read
QUICKSTART.md 5-minute setup guide First time setup
README.md Complete feature overview Understanding capabilities
DEPLOYMENT.md Detailed installation guide Production deployment

Recommended order for new users:

  1. QUICKSTART.md → Get running fast
  2. README.md → Understand what it does
  3. DEPLOYMENT.md → Advanced configuration

📖 Core Documentation

README.md

Complete user documentation

  • Overview and features
  • Installation instructions
  • Tool descriptions and parameters
  • Detection heuristics explained
  • Risk levels and interventions
  • Configuration options
  • Integration examples

Best for: Understanding what ToGMAL does and how to use it

QUICKSTART.md

5-minute setup guide

  • Rapid installation
  • Quick configuration
  • First test examples
  • Troubleshooting basics
  • Essential usage patterns

Best for: Getting started immediately

DEPLOYMENT.md

Advanced deployment guide

  • Platform-specific setup (macOS/Windows/Linux)
  • Claude Desktop integration
  • Production deployment strategies
  • Performance optimization
  • Monitoring and logging
  • Security considerations

Best for: Production deployments and advanced users

🏗️ Technical Documentation

ARCHITECTURE.md

System design and architecture

  • System overview diagrams
  • Component responsibilities
  • Data flow visualizations
  • Detection pipeline
  • Risk calculation algorithm
  • Extension points
  • Performance characteristics
  • Scalability path

Best for: Developers and technical understanding

PROJECT_SUMMARY.md

Project overview and status

  • Feature list
  • Implementation details
  • Design principles
  • Technical specifications
  • Future roadmap preview
  • Success metrics
  • Use cases

Best for: Project stakeholders and contributors

CHANGELOG_ROADMAP.md

Version history and future plans

  • Current version features
  • Planned enhancements (v1.1, v2.0, v3.0)
  • Feature requests
  • Technical debt tracking
  • Research directions
  • Success metrics
  • Community contributions

Best for: Understanding project evolution and contributing

💻 Code and Configuration

togmal_mcp.py

Main server implementation

  • 1,270 lines of production code
  • 5 MCP tools
  • 5 detection heuristics
  • Risk assessment system
  • Taxonomy database
  • Full type hints and documentation

Best for: Understanding implementation details

test_examples.py

Test cases and examples

  • 10 comprehensive test scenarios
  • Expected detection results
  • Edge cases
  • Borderline examples
  • Usage demonstrations

Best for: Testing and validation

requirements.txt

Python dependencies

  • mcp (MCP SDK)
  • pydantic (validation)
  • httpx (async HTTP)

Best for: Dependency installation

claude_desktop_config.json

Configuration example

  • Claude Desktop integration
  • Environment variables
  • Server parameters

Best for: Configuration reference

📋 Quick Reference Tables

Documentation by Task

Task Document(s)
Install for first time QUICKSTART.md
Understand all features README.md
Deploy to production DEPLOYMENT.md
Understand architecture ARCHITECTURE.md
Contribute patterns README.md + CHANGELOG_ROADMAP.md
Troubleshoot issues DEPLOYMENT.md
Extend functionality ARCHITECTURE.md
Check roadmap CHANGELOG_ROADMAP.md

Documentation by Audience

Audience Recommended Reading
End Users QUICKSTART → README
Developers ARCHITECTURE → togmal_mcp.py
DevOps DEPLOYMENT → ARCHITECTURE
Contributors CHANGELOG_ROADMAP → ARCHITECTURE
Researchers PROJECT_SUMMARY → ARCHITECTURE
Management PROJECT_SUMMARY → CHANGELOG_ROADMAP

Documentation by Depth

Level Documents
Quick Overview QUICKSTART.md (5 min)
Basic Understanding README.md (15 min)
Detailed Knowledge DEPLOYMENT.md + ARCHITECTURE.md (45 min)
Complete Mastery All docs + code review (3+ hours)

🎯 Common Use Cases

Use Case 1: First Time Setup 

1. Read QUICKSTART.md (5 min)
2. Install dependencies
3. Configure Claude Desktop
4. Test with example prompts

Use Case 2: Understanding Detection 

1. Read README.md "Detection Heuristics" section
2. Review test_examples.py for examples
3. Check ARCHITECTURE.md for algorithm details
4. Test with your own prompts

Use Case 3: Production Deployment 

1. Read DEPLOYMENT.md completely
2. Review ARCHITECTURE.md for scale considerations
3. Set up monitoring per DEPLOYMENT.md
4. Configure backups and persistence
5. Test in staging environment

Use Case 4: Contributing 

1. Read CHANGELOG_ROADMAP.md for priorities
2. Review ARCHITECTURE.md for extension points
3. Study togmal_mcp.py code structure
4. Submit evidence via MCP tool
5. Propose patterns via GitHub

Use Case 5: Research 

1. Read PROJECT_SUMMARY.md for overview
2. Review ARCHITECTURE.md for methodology
3. Check CHANGELOG_ROADMAP.md for research directions
4. Analyze test_examples.py for scenarios
5. Access taxonomy data via tools

📊 Documentation Statistics

Metric Value
Total Documentation Files 9
Total Lines of Documentation ~3,500
Code Files 2
Total Lines of Code ~1,400
Test Cases 10
ASCII Diagrams 15
Configuration Examples 3

🔗 File Dependency Graph 

README.md (start here)
    │
    ├──► QUICKSTART.md (quick setup)
    │        │
    │        └──► togmal_mcp.py (implementation)
    │                 │
    │                 └──► requirements.txt (dependencies)
    │
    ├──► DEPLOYMENT.md (advanced setup)
    │        │
    │        ├──► claude_desktop_config.json (config)
    │        └──► ARCHITECTURE.md (technical details)
    │
    └──► PROJECT_SUMMARY.md (overview)
             │
             └──► CHANGELOG_ROADMAP.md (future plans)
                      │
                      └──► test_examples.py (validation)

🎓 Learning Path

Beginner Path (2 hours)

  1. QUICKSTART.md (15 min)
  2. README.md (30 min)
  3. test_examples.py review (15 min)
  4. Hands-on testing (60 min)

Intermediate Path (4 hours)

  1. Complete Beginner Path
  2. DEPLOYMENT.md (45 min)
  3. ARCHITECTURE.md overview (30 min)
  4. Configuration experimentation (45 min)
  5. Custom pattern testing (60 min)

Advanced Path (8+ hours)

  1. Complete Intermediate Path
  2. Deep dive into togmal_mcp.py (2 hours)
  3. Full ARCHITECTURE.md study (1 hour)
  4. CHANGELOG_ROADMAP.md review (30 min)
  5. Contribution planning (30 min)
  6. Custom detector implementation (3+ hours)

🔍 Search Tips

Finding Information

Installation Issues? → Search DEPLOYMENT.md for your platform or error

Understanding Detection? → Check README.md heuristics section + ARCHITECTURE.md pipeline

Configuration Questions? → Look in DEPLOYMENT.md + claude_desktop_config.json

Want to Contribute? → Read CHANGELOG_ROADMAP.md + ARCHITECTURE.md extensions

Need Examples? → Check test_examples.py for working code

Performance Concerns? → Review ARCHITECTURE.md performance section

Future Features? → Browse CHANGELOG_ROADMAP.md planned features

📞 Getting Help

Documentation Issues

  • Unclear section? → Note the file and section
  • Missing information? → File an issue
  • Broken example? → Report with error message

Technical Support

  1. Check DEPLOYMENT.md troubleshooting
  2. Review relevant documentation section
  3. Search existing GitHub issues
  4. File new issue with details

Contributing

  1. Read CHANGELOG_ROADMAP.md priorities
  2. Check ARCHITECTURE.md for extension points
  3. Follow contribution guidelines
  4. Submit PR with documentation updates

📱 Quick Links

Resource Link/Location
Main Server togmal_mcp.py
Quick Start QUICKSTART.md
Full Guide README.md
Setup Help DEPLOYMENT.md
Architecture ARCHITECTURE.md
Roadmap CHANGELOG_ROADMAP.md
Examples test_examples.py
Config claude_desktop_config.json
Dependencies requirements.txt

✅ Documentation Coverage

Topic Coverage Documents
Installation ✅ Complete QUICKSTART, README, DEPLOYMENT
Configuration ✅ Complete DEPLOYMENT, claude_desktop_config
Usage ✅ Complete README, test_examples
Architecture ✅ Complete ARCHITECTURE
Contributing ✅ Complete CHANGELOG_ROADMAP
API Reference ✅ Complete README (tool descriptions)
Troubleshooting ✅ Complete DEPLOYMENT
Examples ✅ Complete test_examples, README
Future Plans ✅ Complete CHANGELOG_ROADMAP
Performance ✅ Complete ARCHITECTURE

🎉 You're Ready!

Pick your starting point based on your goal:

  • Quick Start → QUICKSTART.md
  • Learn Features → README.md
  • Deploy Production → DEPLOYMENT.md
  • Understand Code → ARCHITECTURE.md
  • Plan Future → CHANGELOG_ROADMAP.md

Happy building with ToGMAL! 🛡️

Last Updated: October 2025
Documentation Version: 1.0.0
Total Files: 9 documents + 2 code files