Set apairs according to a list of (i,j) tuples.

@param jf a JoingFragment
541385
public void apairs_from_idxlst(JointFragments jf) {
		List<int[]> il = jf.getIdxlist();
		//System.out.println("Alt Alig apairs_from_idxlst");

		aligpath = new IndexPair[il.size()];
		idx1 = new int[il.size()];
		idx2 = new int[il.size()];
		for (int i =0 ; i < il.size();i++) {
			int[] p = il.get(i);
			//System.out.print(" idx1 " + p[0] + " idx2 " + p[1]);
			idx1[i] = p[0];
			idx2[i] = p[1];
			aligpath[i] = new IndexPair((short)p[0],(short)p[1]);

		}
		eqr0  = idx1.length;
		//System.out.println("eqr " + eqr0);
		gaps0 = count_gaps(idx1,idx2);

	}
668359
public void put(int i, int j, double value) {

		if (i < 0 || i >= N) throw new IllegalArgumentException("Illegal index");
		if (j < 0 || j >= N) throw new IllegalArgumentException("Illegal index");

		rows[i].put(j, value);
	}
578053
@Override
  public final synchronized void set(final Class<?> pBeanClass,
    final IFillerObjectFields<?> pBean) throws Exception {
    this.fillersMap.put(pBeanClass, pBean);
  }
17932
def setJoiner(self, joiner):
        
        text = QueryCompound.Op[joiner].upper()
        
        if self._first:
            if self._last:
                self.uiJoinSBTN.setCurrentAction(None)
            else:
                act = self.uiJoinSBTN.findAction(text)
                self.uiJoinSBTN.setCurrentAction(act)
        else:
            self.uiJoinSBTN.actions()[0].setText(text)
577568
public void setFields(FdfReader fdf) {
        HashMap map = fdf.getFields();
        for (Iterator it = map.entrySet().iterator(); it.hasNext();) {
            Map.Entry entry = (Map.Entry) it.next();
            String key = (String) entry.getKey();
            PdfDictionary dic = (PdfDictionary) entry.getValue();
            PdfObject v = dic.get(PdfName.V);
            if (v != null) {
                setField(key, v);
            }
            v = dic.get(PdfName.A); // (plaflamme)
            if (v != null) {
            	setField(key, v);
            }
        }
    }
817276
public void setEntities(FSArray v) {
    if (Document_Type.featOkTst && ((Document_Type)jcasType).casFeat_entities == null)
      jcasType.jcas.throwFeatMissing("entities", "de.julielab.jules.types.ace.Document");
    jcasType.ll_cas.ll_setRefValue(addr, ((Document_Type)jcasType).casFeatCode_entities, jcasType.ll_cas.ll_getFSRef(v));}
351189
@JSONField(serialize = false, deserialize = false)
  public void setMentionListString(String content) {
    if (StringUtil.isEmpty(content)) {
      this.mentionList = null;
    } else {
      this.mentionList = new ArrayList<>();
      String[] peerIdArray = content.split("[,\\s]");
      for (String peer: peerIdArray) {
        if (!StringUtil.isEmpty(peer)) {
          this.mentionList.add(peer);
        }
      }
    }
  }
623298
public void setFields(T0 value0, T1 value1, T2 value2, T3 value3, T4 value4) {
		this.f0 = value0;
		this.f1 = value1;
		this.f2 = value2;
		this.f3 = value3;
		this.f4 = value4;
	}
21770
public void set(double fx, double fy, double skew) {
		this.fx = fx;
		this.fy = fy;
		this.skew = skew;
	}
705152
public void updateAssociations(JMFType type) {
    super.updateAssociations(type);
    if (getCaseCount() != ((JSVariant)type).getCaseCount())
      throw new IllegalStateException();
    if (cases != null)
      for (int i = 0; i < cases.length; i++)
         cases[i].updateAssociations(((JSVariant)type).getCase(i));
  }
538933
public void setFilters(String filters)
    {
        for (String filter : filters.split(",")) {
            filteredFrames.add("at " + filter.trim());
        }
    }
333392
public void setKeyword(java.util.Collection<KeywordFilter> keyword) {
        if (keyword == null) {
            this.keyword = null;
            return;
        }

        this.keyword = new java.util.ArrayList<KeywordFilter>(keyword);
    }
916565
public void setActions(java.util.Collection<String> actions) {
        if (actions == null) {
            this.actions = null;
            return;
        }

        this.actions = new java.util.ArrayList<String>(actions);
    }
1350138
@Override
	public void set(double x, double y, double z, double sizex, double sizey, double sizez) {
		setFromCorners(x, y, z, x+sizex, y+sizey, z+sizez);
	}
791596
public static void join(StringBuilder buf, Iterable<?> values, String separator) {
		for (Iterator<?> i = values.iterator(); i.hasNext();) {
			buf.append(i.next());
			if (i.hasNext()) {
				buf.append(separator);
			}
		}
	}
1329238
@Override
  public final synchronized void set(final Class<?> pBeanClass,
    final IFactorySimple<?> pBean) throws Exception {
    this.factoriesMap.put(pBeanClass, pBean);
  }
1093863
public void setAssociationFilterList(java.util.Collection<AssociationFilter> associationFilterList) {
        if (associationFilterList == null) {
            this.associationFilterList = null;
            return;
        }

        this.associationFilterList = new com.amazonaws.internal.SdkInternalList<AssociationFilter>(associationFilterList);
    }