------------------------------------------------------------------
331440
public static final  void sortAfps(AFPChain afpChain, Atom[] ca1, Atom[] ca2)
	{


		List<AFP> afpSet = afpChain.getAfpSet();

		if ( debug)
			System.err.println("entering sortAfps");

		int pro1Len = ca1.length;
		int pro2Len = ca2.length;

		afpChain.setAfpIndex(      new int[pro1Len][pro2Len]); //the index of (i,j) pair in AFP list, otherwise -1
		afpChain.setAfpAftIndex(   new int[pro1Len][pro2Len]);  //the index of AFP (i,j*) nearest to (i,j), j*<j. if a AFP exits for (i,j), it equals to afpIndex
		afpChain.setAfpBefIndex(   new int[pro1Len][pro2Len]); //the index of AFP (i,j*) nearest to (i,j), j*>j. if a AFP exits for (i,j), it equals to afpIndex

		int[][] afpIndex       = afpChain.getAfpIndex();
		int[][] afpAftIndex    = afpChain.getAfpAftIndex();
		int[][] afpBefIndex    = afpChain.getAfpBefIndex();

		for(int i = 0; i < pro1Len; i ++)   {
			for(int j = 0; j < pro2Len; j ++)   {

				afpIndex[i][j] = afpAftIndex[i][j] = afpBefIndex[i][j] = -1;
			}
		}

		//index the AFP for easy extraction of compatible AFPs
		int afpNum = afpSet.size();

		int     b0 = 0;
		for(int a = 0; a < afpNum; a ++)    {
			if(a == afpNum - 1 || afpSet.get(a).getP1() != afpSet.get(a+1).getP1())   {
				int i = afpSet.get(a).getP1();
				for(int b = b0; b <= a; b ++)       {
					int j = afpSet.get(b).getP2();
					afpIndex[i][j]=b ;
					afpBefIndex[i][j]=b;
					afpAftIndex[i][j]=b;
					if(afpSet.get(b).getP1() != i)    {
						System.err.println(String.format("Warning: wrong afp index %d %d\n", i, afpSet.get(b).getP1()));
						return;
					}
				}
				for(int k = 1; k < pro2Len; k ++)   {
					if( afpBefIndex[i][k] == -1){
						afpBefIndex[i][k] = afpBefIndex[i][k-1];
					}
				}
				for(int k = pro2Len - 2; k >= 0; k --)      {
					if(afpAftIndex[i][k] == -1) {
						afpAftIndex[i][k] =  afpAftIndex[i][k+1];
					}
				}
				b0 = a + 1;
			}
		}

		if ( debug)
			System.err.println("done sortAfps");


	}
159786
public function commit() : void
    {
        if (null === $this->is_valid) {
            $this->validate();
        }
        if ($this->is_valid && $this->user_value != null) {
            $this->default_value = $this->user_value;
        }
        $this->user_value = null;
        $this->is_valid = null;
        $this->is_changed = false;
    }
662729
function Context() {
	/**
	 * @member {Object}
	 * @property {Object} client
	 * @property {Object<Call>} client.map - map from call name and call id
	 * @property {Array<Call>} client.list
	 * @property {Object} server
	 * @property {Object<Call>} server.map - map from call name and call id
	 * @property {Array<Call>} server.list
	 * @private
	 */
	this._calls = {
		client: {
			map: Object.create(null),
			list: []
		},
		server: {
			map: Object.create(null),
			list: []
		}
	}

	/**
	 * @member {Object}
	 * @property {Object} client
	 * @property {Object<Message>} client.map - map from message name and message id
	 * @property {Array<Message>} client.list
	 * @property {Object} server
	 * @property {Object<Message>} server.map - map from message name and message id
	 * @property {Array<Message>} server.list
	 * @private
	 */
	this._messages = {
		client: {
			map: Object.create(null),
			list: []
		},
		server: {
			map: Object.create(null),
			list: []
		}
	}
}
701946
public function initRuntime()
    {
        $this->runtimeInitialized = true;

        foreach ($this->getExtensions() as $extension) {
            $extension->initRuntime($this);
        }
    }
649406
protected function initItems()
	{
		$initItems = null;
		
		if ($this->items != null)
		{
			foreach ($this->items as $item)
			{
				if (isset($item['value']))
				{
					$i = $item['value'];
					unset($item['value']);
					$initItems[$i] = $item;
				}
				else 
				{
					$initItems = $this->items;	
				}
			}
			
			$this->items = array_replace($this->defaults, $initItems);
		}
		else 
		{
			$this->items = $this->defaults;
		}
	}
670056
public function init()
    {
        parent::init();

        if (is_array($this->pager) && !ArrayHelper::keyExists('class', $this->pager)) {
            $this->pager = [
                'class' => LinkPager::class,
            ];
        }
    }
138043
private void calcOffsets()
    {
        //Find the longest line
        int rowidx[] = new int[rows.size()];
        int maxCells = 0;
        for (int r = 0; r < rows.size(); r++)
        {
            int count = rows.elementAt(r).getCellCount();
            if (count > maxCells) maxCells = count;
            rowidx[r] = 0;
            rows.elementAt(r).rewind();
        }
        
        //determine the cell positions
        int col = 0;
        boolean cell_found = true;
        while (cell_found)
        {
            cell_found = false;
            int r = 0;
            while (r < rows.size())
            {
                TableRowBox row = rows.elementAt(r);
                if (row.hasNext())
                {
                    cell_found = true;
                    if (rowidx[r] <= col) //we are not in the middle of some colspan for this row
                    {
                        //get the current element
                        TableCellBox cell = row.next();
                        //set the new position
                        cell.setCellPosition(rowidx[r], r);
                        //move the row indices
                        for (int nr = r; nr < r + cell.getRowspan(); nr++)
                        {
                            if (nr < rows.size())
                            {
                                rowidx[nr] += cell.getColspan();
                                if (rowidx[nr] > numCols) numCols = rowidx[nr]; 
                            }
                            else
                                cell.rowspan--;
                        }
                        r += cell.getRowspan();
                    }
                    else
                        r++;
                }
                else
                    r++;
            }
            col++;
        }    
        //build the cell array
        for (int i = 0; i < rows.size(); i++)
            rows.elementAt(i).rewind();
        cells = new TableCellBox[numCols][rows.size()];
        for (int c = 0; c < maxCells; c++)
        {
            for (int r = 0; r < rows.size(); r++)
            {
                TableRowBox row = rows.elementAt(r);
                if (row.hasNext())
                {
                    TableCellBox cell = row.next();
                    if (cell.getRow() + cell.getRowspan() > rows.size())
                        cell.setRowspan(rows.size() - cell.getRow());
                    if (cell.getColumn() + cell.getColspan() > numCols)
                        cell.setColspan(numCols - cell.getColumn());
                    
                    int endrow = cell.getRow() + cell.getRowspan();
                    int endcol = cell.getColumn() + cell.getColspan();
                    //add it to the mesh
                    for (int nr = cell.getRow(); nr < endrow; nr++)
                        for (int nc = cell.getColumn(); nc < endcol; nc++)
                            cells[nc][nr] = cell;
                }
            }
        }
    }
132156
public function initialize()
    {
        if ($this->initialized === false) {
            $this->data = $this->cursor->toArray();
        }
        $this->initialized = true;
    }
1230373
public function commit()
    {
        $this->driver->inTransaction(
            function (Driver $driver, array $pendingQueries) {
                /** @var PendingQuery[] $pendingQueries */
                foreach ($pendingQueries as $item) {
                    $item->execute();
                }
            },
            $this->pendingQueries
        );
        $this->pendingQueries = [];
    }
328211
public function initialize()
    {
        if (true === $this->hasBeenInitialized) {
            return;
        }

        $this->hasBeenInitialized = true;

        foreach ($this->service as $service) {
            list($serviceClassName, $serviceOptions) = $this->manageServiceData($service);

            $this->serviceInstances[$serviceClassName] = $this->getServiceInstance($serviceClassName, $serviceOptions);
        }
    }
763427
public function init()
    {
        parent::init();

        if ($this->tile !== null) {
            $this->tile->init();
        }

        foreach ($this->groups as $group) {
            $group->init();
            // index the group by id if it is not already indexed
            if (!array_key_exists($group->id, $this->groups_by_id)) {
                $this->groups_by_id[$group->id] = $group;
            }
        }
    }
367409
private void onEnd()
   {
      long result = System.currentTimeMillis() - currentTime.get().poll();
      times.incrementAndGet();
      if (result < min.get())
      {
         min.set(result);
      }
      if (max.get() < result)
      {
         max.set(result);
      }
      total.addAndGet(result);
   }
619344
public function index()
    {
        $this->getListingService()
            ->setOrder($this->getOrder())
            ->setPagination($this->getPagination())
            ->getFilters()->add($this->getSearchFilter());
        $this->set(
            [
                $this->getEntityNamePlural() => $this->getListingService()
                    ->getList(),
                'pagination' => $this->getListingService()->getPagination()
            ]
        );
    }
1257882
private void init()
	{

		sum = BigInteger.ZERO;
		sumByMillisec = BigInteger.ZERO;
		currentVal = -1;
		count =0;
		avg = -1;
		max = -1;
		min = -1;
	}
1317871
public function done()
    {
        if ($this->watcher) {
            if ($this->watcher->count > 0) {
                $this->watcher->count--;
            }
            
            $this->watcher = null;
        }
    }
410957
@Override
  public void aggregate()
  {
    final ArrayOfDoublesSketch update = selector.getObject();
    if (update == null) {
      return;
    }
    synchronized (this) {
      union.update(update);
    }
  }
202558
public function initializeObject()
    {
        if ($this->cache->has('parsedFormats') && $this->cache->has('parsedFormatsIndices') && $this->cache->has('localizedSymbols')) {
            $this->parsedFormats = $this->cache->get('parsedFormats');
            $this->parsedFormatsIndices = $this->cache->get('parsedFormatsIndices');
            $this->localizedSymbols = $this->cache->get('localizedSymbols');
        }
    }