Copies the contents of another matrix.

@return a reference to this matrix, for chaining.
189683
public Matrix3 set (IMatrix3 other) {
        return set(other.m00(), other.m10(), other.m20(),
                   other.m01(), other.m11(), other.m21(),
                   other.m02(), other.m12(), other.m22());
    }
117919
public Matrix transpose() {
        Matrix A = new Matrix(N, M);
        for (int i = 0; i < M; i++) {
            for (int j = 0; j < N; j++) {
                A.data[j][i] = data[i][j];
            }
        }
        return A;
    }
109844
public Matrix3x2d set(Matrix3x2dc m) {
        if (m instanceof Matrix3x2d) {
            MemUtil.INSTANCE.copy((Matrix3x2d) m, this);
        } else {
            setMatrix3x2dc(m);
        }
        return this;
    }
852693
public static Matrix constructWithCopy(double[][] A)
    {
        int m = A.length;
        int n = A[0].length;
        Matrix X = new Matrix(m, n);
        double[][] C = X.getArray();
        for (int i = 0; i < m; i++)
        {
            if (A[i].length != n)
            {
                throw new IllegalArgumentException
                        ("All rows must have the same length.");
            }
            for (int j = 0; j < n; j++)
            {
                C[i][j] = A[i][j];
            }
        }
        return X;
    }
33717
public Matrix4f set(Matrix4x3fc m) {
        if (m instanceof Matrix4x3f) {
            MemUtil.INSTANCE.copy((Matrix4x3f) m, this);
        } else {
            setMatrix4x3fc(m);
        }
        this._properties(m.properties() | PROPERTY_AFFINE);
        return this;
    }
1274238
public T transpose() {
        T ret = createMatrix(mat.getNumCols(),mat.getNumRows(), mat.getType());

        ops.transpose(mat,ret.mat);

        return ret;
    }
333393
public TileMatrixSet getTileMatrixSet() {
		TileMatrixSet result = null;
		if (tileMatrixSet.size() > 1) {
			// This shouldn't happen with the table name primary key on tile
			// matrix set
			throw new GeoPackageException(
					"Unexpected state. More than one TileMatrixSet has a foreign key to the Contents. Count: "
							+ tileMatrixSet.size());
		} else if (tileMatrixSet.size() == 1) {
			CloseableIterator<TileMatrixSet> iterator = tileMatrixSet
					.closeableIterator();
			try {
				result = iterator.next();
			} finally {
				try {
					iterator.close();
				} catch (IOException e) {
					throw new GeoPackageException(
							"Failed to close the Tile Matrix Set iterator", e);
				}
			}
		}
		return result;
	}
922211
def copy(self):
        """"""
        params = {}
        for key, val in self.__dict__.items():
            if 'matrix' not in key:
                k = key[1:] if key[0] == '_' else key
                params[k] = val
        # params = {param: params[param] for param in params}
        return self.__class__(**params)
607369
def copy(self):
        
        vec = np.copy(self._vec)
        return ScalarCoefs(vec, self.nmax, self.mmax)
276256
public static Matrix copy(Matrix m) {
		if (m==null) throw new NullPointerException();
		Matrix copy=createMatrix(m.getRowCount(), m.getColumnCount());
		for (int row=0; row<m.getRowCount(); row++) for (int col=0; col<m.getColumnCount(); col++)
			copy.set(row, col, m.getQuick(row, col));
		return copy;
	}

	/**
	 * Creates a copy of a matrix.
	 * @param m the matrix to copy
	 * @return a new matrix with the same dimensions and contents as the argument
	 * @throws NullPointerException if {@code matrix} is {@code null}
	 */
	public static Matrix2 copy(Matrix2 m) {
		return (Matrix2) copy((Matrix)m);
	}

	/**
	 * Creates a copy of a matrix.
	 * @param m the matrix to copy
	 * @return a new matrix with the same dimensions and contents as the argument
	 * @throws NullPointerException if {@code matrix} is {@code null}
	 */
	public static Matrix3 copy(Matrix3 m) {
		return (Matrix3) copy((Matrix)m);
	}

	/**
	 * Creates a copy of a matrix.
	 * @param m the matrix to copy
	 * @return a new matrix with the same dimensions and contents as the argument
	 * @throws NullPointerException if {@code matrix} is {@code null}
	 */
	public static Vector copy(Vector m) {
		return (Vector) copy((Matrix)m);
	}

	/**
	 * Creates a copy of a matrix.
	 * @param m the matrix to copy
	 * @return a new matrix with the same dimensions and contents as the argument
	 * @throws NullPointerException if {@code matrix} is {@code null}
	 */
	public static Vector2 copy(Vector2 m) {
		return (Vector2) copy((Matrix)m);
	}

	/**
	 * Creates a copy of a matrix.
	 * @param m the matrix to copy
	 * @return a new matrix with the same dimensions and contents as the argument
	 * @throws NullPointerException if {@code matrix} is {@code null}
	 */
	public static Vector3 copy(Vector3 m) {
		return (Vector3) copy((Matrix)m);
	}

	/**
	 * Creates a copy of a matrix.
	 * @param m the matrix to copy
	 * @return a new matrix with the same dimensions and contents as the argument
	 * @throws NullPointerException if {@code matrix} is {@code null}
	 */
	public static Vector4 copy(Vector4 m) {
		return (Vector4) copy((Matrix)m);
	}
	
	/**
	 * Creates a matrix with the same dimensions as the argument.
	 * @param matrix the template matrix
	 * @return a new zero matrix with the same dimensions as the argument
	 * @throws NullPointerException if {@code matrix} is {@code null}
	 */
	public static Matrix createLike(Matrix matrix) {
		return createMatrix(matrix.getRowCount(), matrix.getColumnCount());
	}
	
	/**
	 * Creates a matrix with the same dimensions as the argument.
	 * @param matrix the template matrix
	 * @return a new zero matrix with the same dimensions as the argument
	 * @throws NullPointerException if {@code matrix} is {@code null}
	 */
	public static Matrix2 createLike(Matrix2 matrix) {
		return (Matrix2) createMatrix(matrix.getRowCount(), matrix.getColumnCount());
	}
	
	/**
	 * Creates a matrix with the same dimensions as the argument.
	 * @param matrix the template matrix
	 * @return a new zero matrix with the same dimensions as the argument
	 * @throws NullPointerException if {@code matrix} is {@code null}
	 */
	public static Matrix3 createLike(Matrix3 matrix) {
		return (Matrix3) createMatrix(matrix.getRowCount(), matrix.getColumnCount());
	}
	
	/**
	 * Creates a matrix with the same dimensions as the argument.
	 * @param matrix the template matrix
	 * @return a new zero matrix with the same dimensions as the argument
	 * @throws NullPointerException if {@code matrix} is {@code null}
	 */
	public static Vector createLike(Vector matrix) {
		return (Vector) createMatrix(matrix.getRowCount(), matrix.getColumnCount());
	}
	
	/**
	 * Creates a matrix with the same dimensions as the argument.
	 * @param matrix the template matrix
	 * @return a new zero matrix with the same dimensions as the argument
	 * @throws NullPointerException if {@code matrix} is {@code null}
	 */
	public static Vector2 createLike(Vector2 matrix) {
		return (Vector2) createMatrix(matrix.getRowCount(), matrix.getColumnCount());
	}
	
	/**
	 * Creates a matrix with the same dimensions as the argument.
	 * @param matrix the template matrix
	 * @return a new zero matrix with the same dimensions as the argument
	 * @throws NullPointerException if {@code matrix} is {@code null}
	 */
	public static Vector3 createLike(Vector3 matrix) {
		return (Vector3) createMatrix(matrix.getRowCount(), matrix.getColumnCount());
	}
	
	/**
	 * Creates a matrix with the same dimensions as the argument.
	 * @param matrix the template matrix
	 * @return a new zero matrix with the same dimensions as the argument
	 * @throws NullPointerException if {@code matrix} is {@code null}
	 */
	public static Vector4 createLike(Vector4 matrix) {
		return (Vector4) createMatrix(matrix.getRowCount(), matrix.getColumnCount());
	}
	
	/**
	 * Creates an identity matrix of the specified dimension.
	 * @param size the dimension of the matrix
	 * @return a <code>size</code>×<code>size</code> identity matrix
	 * @throws IllegalArgumentException if the size is not positive
	 */
	public static Matrix identity(int size) {
		Matrix m = MatrixFactory.createMatrix(size, size);
		for (int i = 0; i < size; i++)
			m.set(i, i, 1);
		return m;
	}

	/**
	 * Creates a matrix of the specified size whose elements are all 1.
	 * @param rows the number of rows
	 * @param columns the number of columns
	 * @return a <code>rows</code>×<code>columns</code> matrix whose elements are all 1
	 * @throws IllegalArgumentException if either argument is non-positive
	 */
	public static Matrix ones(int rows, int columns) {
		Matrix m = MatrixFactory.createMatrix(rows, columns);
		for (int i = 0; i < m.getRowCount(); i++)
			for (int j = 0; j < m.getColumnCount(); j++)
				m.set(i, j, 1);
		return m;
	}

	/**
	 * Creates a matrix of the specified size whose elements are pseudorandom, uniformly distributed
	 * values between 0 (inclusive) and 1 (exclusive).
	 * @param rows the number of rows
	 * @param columns the number of columns
	 * @return a <code>rows</code>×<code>columns</code> matrix of random elements
	 * @throws IllegalArgumentException if either argument is non-positive
	 */
	public static Matrix random(int rows, int columns) {
		Matrix m = MatrixFactory.createMatrix(rows, columns);
		for (int i = 0; i < m.getRowCount(); i++)
			for (int j = 0; j < m.getColumnCount(); j++)
				m.set(i, j, Math.random());
		return m;
	}
	
	//
	// Matrix creation from arrays
	//
	
	/**
	 * Creates a matrix and initializes its elements from an array. The parameter should be a {@code double[r][c]}
	 * array with {@code r>0} and {@code c>0}. The matrix element at row {@code row} and column {@code col} will be
	 * {@code elements[row][col]}.
	 * @param elements the array containing the elements of the matrix
	 * @return the new matrix initialized from the array
	 * @throws NullPointerException if the array is {@code null}
	 * @throws IllegalArgumentException if the dimensions of the array are not valid
	 */
	public static Matrix createMatrix(double[][] elements) {
		Matrix m=createMatrix(elements.length, elements[0].length);
		for (int row=0; row<m.getRowCount(); row++) {
			double[] rowData=elements[row];
			if (rowData.length!=m.getColumnCount()) throw new IllegalArgumentException("Invalid array");
			for (int col=0; col<m.getColumnCount(); col++) {
				m.set(row, col, rowData[col]);
			}
		}
		return m;
	}
	
	/**
	 * Creates a matrix and initializes its elements from an array. The parameter should be a {@code double[2][2]}
	 * array. The matrix element at row {@code row} and column {@code col} will be
	 * {@code elements[row][col]}.
	 * @param elements the array containing the elements of the matrix
	 * @return the new matrix initialized from the array
	 * @throws NullPointerException if the array is {@code null}
	 * @throws IllegalArgumentException if the dimensions of the array are not correct
	 */
	public static Matrix2 createMatrix2(double[][] elements) {
		Matrix m=createMatrix(elements);
		if (m.getRowCount()!=2 || m.getColumnCount()!=2)
			throw new IllegalArgumentException("Array describes a matrix of size "+m.getRowCount()+"x"+m.getColumnCount()+" instead of 2x2");
		return (Matrix2)m;
	}
	
	/**
	 * Creates a matrix and initializes its elements from an array. The parameter should be a {@code double[3][3]}
	 * array. The matrix element at row {@code row} and column {@code col} will be
	 * {@code elements[row][col]}.
	 * @param elements the array containing the elements of the matrix
	 * @return the new matrix initialized from the array
	 * @throws NullPointerException if the array is {@code null}
	 * @throws IllegalArgumentException if the dimensions of the array are not correct
	 */
	public static Matrix3 createMatrix3(double[][] elements) {
		Matrix m=createMatrix(elements);
		if (m.getRowCount()!=3 || m.getColumnCount()!=3)
			throw new IllegalArgumentException("Array describes a matrix of size "+m.getRowCount()+"x"+m.getColumnCount()+" instead of 3x3");
		return (Matrix3)m;
	}
	
	/**
	 * Creates a vector and initializes its elements from an array.
	 * @param elements the array containing the elements of the vector
	 * @return the new vector initialized from the array
	 * @throws NullPointerException if the array is {@code null}
	 * @throws IllegalArgumentException if the length of the array is zero
	 */
	public static Vector createVector(double[] elements) {
		Vector v=createVector(elements.length);
		for (int i=0; i<elements.length; i++)
			v.setCoordQuick(i, elements[i]);
		return v;
	}
	
	/**
	 * Creates a matrix backed by the specified data structure.
	 * @param core the data structure for the new matrix
	 * @return a matrix of proper type using the specified matrix core for its implementation
	 * @throws NullPointerException if {@code core} is {@code null}
	 */
	public static Matrix create(MatrixCore core) {
		if (core.getColumnCount()==1) {
			switch (core.getRowCount()) {
				case 2: return new CoredVector2Impl(core);
				case 3: return new CoredVector3Impl(core);
				case 4: return new CoredVector4Impl(core);
				default: return new CoredVectorImpl(core);
			}
		} else {
			if (core.getRowCount()==2 && core.getColumnCount()==2)
				return new CoredMatrix2Impl(core);
			if (core.getRowCount()==3 && core.getColumnCount()==3)
				return new CoredMatrix3Impl(core);
			return new CoredMatrixImpl(core);
		}
	}
}
462211
public Polygon copy() {
		float[] copyPoints = new float[points.length];
		System.arraycopy(points, 0, copyPoints, 0, copyPoints.length);
		
		return new Polygon(copyPoints);
	}
1350799
public Matrix getS () {
		Matrix X = new Matrix(n,n);
		double[][] S = X.getArray();
		for (int i = 0; i < n; i++) {
			for (int j = 0; j < n; j++) {
				S[i][j] = 0.0;
			}
			S[i][i] = this.s[i];
		}
		return X;
	}
472754
public Matrix transpose()
    {
        Matrix toReturn = new DenseMatrix(cols(), rows());
        this.transpose(toReturn);
        return toReturn;
    }
703174
public LinkedMultiValueMap<K, V> deepCopy() {
        LinkedMultiValueMap<K, V> copy = new LinkedMultiValueMap<>(this.size());
        this.forEach((key, value) -> copy.put(key, new LinkedList<>(value)));
        return copy;
    }
533001
@Override
	public int[][][] getScoreMatrix() {
		boolean tempStoringScoreMatrix = storingScoreMatrix;
		if (scores == null) {
			storingScoreMatrix = true;
			align();
			if (scores == null) {
				return null;
			}
		}
		int[][][] copy = scores;
		if (tempStoringScoreMatrix) {
			copy = new int[scores.length][scores[0].length][];
			for (int i = 0; i < copy.length; i++) {
				for (int j = 0; j < copy[0].length; j++) {
					copy[i][j] = Arrays.copyOf(scores[i][j], scores[i][j].length);
				}
			}
		}
		setStoringScoreMatrix(tempStoringScoreMatrix);
		return copy;
	}
822072
public InputStream getContents() {
        final byte[] copy;
        synchronized (this) {
            final int length = this.contents.length;
            copy = new byte[length];
            System.arraycopy(this.contents, 0, copy, 0, this.contents.length);
        }
        return new ByteArrayInputStream(copy);
    }
902695
public E[][] multiplyMatrix(E[][] matrix1, E[][] matrix2)
    {
        // Check bounds
        if (matrix1[0].length != matrix2.length)
        {
            throw new SecretShareException("The matrices do not have compatible size");
        }

        // Create result matrix
        E[][] result = //(E[][]) new Number[matrix1.length][matrix2[0].length];
                create(matrix1.length, matrix2[0].length);

        // Perform multiplication of two matrices
        for (int i = 0; i < result.length; i++)
        {
            for (int j = 0; j < result[0].length; j++)
            {
                result[i][j] = zero();

                for (int k = 0; k < matrix1[0].length; k++)
                {
                    result[i][j] = add(result[i][j],
                                   multiply(matrix1[i][k], matrix2[k][j]));
                }
            }
        }

        return result;
    }