app.py

import gradio as gr
import pandas as pd
import numpy as np
from transformers import AutoTokenizer, AutoModelForSequenceClassification, Trainer


# summary function - test for single gradio function interfrace
def bulk_function(filename):
  # Create class for data preparation
  class SimpleDataset:
      def __init__(self, tokenized_texts):
          self.tokenized_texts = tokenized_texts
      
      def __len__(self):
          return len(self.tokenized_texts["input_ids"])
      
      def __getitem__(self, idx):
          return {k: v[idx] for k, v in self.tokenized_texts.items()}

  # load tokenizer and model, create trainer
  model_name = "j-hartmann/MindMiner-Binary"
  tokenizer = AutoTokenizer.from_pretrained(model_name)
  model = AutoModelForSequenceClassification.from_pretrained(model_name)
  trainer = Trainer(model=model)  
  print(filename, type(filename))
  print(filename.name)


  # check type of input file
  if filename.name.split(".")[1] == "csv":
    print("entered")
    # read file, drop index if exists
    df_input = pd.read_csv(filename.name, index_col=False)
    if df_input.columns[0] == "Unnamed: 0":
      df_input = df_input.drop("Unnamed: 0", axis=1)
  elif filename.name.split(".")[1] == "xlsx":
    df_input = pd.read_excel(filename.name, index_col=False)
    # handle Unnamed
    if df_input.columns[0] == "Unnamed: 0":
      df_input = df_input.drop("Unnamed: 0", axis=1)
  else:
    return


  # read csv
  # even if index given, drop it
  #df_input = pd.read_csv(filename.name, index_col=False)
  #print("df_input", df_input)
  
  # expect csv format to be in: 
  # 1: ID
  # 2: Texts
  # no index
  # store ids in ordered list
  ids = df_input[df_input.columns[0]].to_list()

  # store sentences in ordered list
  # expects sentences to be in second col
  # of csv with two cols
  lines_s = df_input[df_input.columns[1]].to_list()

    # Tokenize texts and create prediction data set
  tokenized_texts = tokenizer(lines_s,truncation=True,padding=True)
  pred_dataset = SimpleDataset(tokenized_texts)

    # Run predictions -> predict whole df
  predictions = trainer.predict(pred_dataset)

    # Transform predictions to labels
  preds = predictions.predictions.argmax(-1)
  labels = pd.Series(preds).map(model.config.id2label)
  scores = (np.exp(predictions[0])/np.exp(predictions[0]).sum(-1,keepdims=True)).max(1)

  # round scores
  scores_rounded = [round(score, 3) for score in scores]

    # scores raw
  temp = (np.exp(predictions[0])/np.exp(predictions[0]).sum(-1,keepdims=True))

  # container
  low = []
  high = []

  # extract scores (as many entries as exist in pred_texts)
  for i in range(len(lines_s)):
    low.append(round(temp[i][0], 3))
    high.append(round(temp[i][1], 3))


  # define df
  df = pd.DataFrame(list(zip(ids,lines_s,labels,scores_rounded, low, high)), columns=[df_input.columns[0], df_input.columns[1],'max_label','max_score', 'low', 'high'])
  print(df)
  # save results to csv
  YOUR_FILENAME = filename.name.split(".")[0] + "_MindMiner_Predictions" + ".csv"  # name your output file
  df.to_csv(YOUR_FILENAME, index=False)

  # return dataframe for space output
  return YOUR_FILENAME
  
gr.Interface(bulk_function, inputs=[gr.inputs.File(file_count="single", type="file", label="Upload file", optional=False),],
             outputs=[gr.outputs.File(label="Output file")],
            # examples=[["YOUR_FILENAME.csv"]], # computes, doesn't export df so far
             theme="huggingface",
             title="Apply MindMiner to Your CSV",
             description="Upload csv file with 2 columns (in order): (a) ID column, (b) text column. The script returns a new file that includes both the ID column and text column together with the mind perception predictions using MindMiner.",
             allow_flagging=False,
             ).launch(debug=True)