Spaces:
Sleeping
Sleeping
Update app.py
Browse files
app.py
CHANGED
|
@@ -898,6 +898,50 @@ def main():
|
|
| 898 |
- **Artificial Superintelligence (ASI)**
|
| 899 |
- Not yet achieved
|
| 900 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 901 |
"""
|
| 902 |
st.sidebar.markdown(markdownPapers)
|
| 903 |
|
|
|
|
| 898 |
- **Artificial Superintelligence (ASI)**
|
| 899 |
- Not yet achieved
|
| 900 |
|
| 901 |
+
|
| 902 |
+
# 🧬 Innovative Architecture of AlphaFold2: A Hybrid System
|
| 903 |
+
|
| 904 |
+
## 1. 🔢 Input Sequence
|
| 905 |
+
- The process starts with an **input sequence** (protein sequence).
|
| 906 |
+
|
| 907 |
+
## 2. 🗄️ Database Searches
|
| 908 |
+
- **Genetic database search** 🔍
|
| 909 |
+
- Searches genetic databases to retrieve related sequences.
|
| 910 |
+
- **Structure database search** 🔍
|
| 911 |
+
- Searches structural databases for template structures.
|
| 912 |
+
- **Pairing** 🤝
|
| 913 |
+
- Aligns sequences and structures for further analysis.
|
| 914 |
+
|
| 915 |
+
## 3. 🧩 MSA (Multiple Sequence Alignment)
|
| 916 |
+
- **MSA representation** 📊 (r,c)
|
| 917 |
+
- Representation of multiple aligned sequences used as input.
|
| 918 |
+
|
| 919 |
+
## 4. 📑 Templates
|
| 920 |
+
- Template structures are paired to assist the model.
|
| 921 |
+
|
| 922 |
+
## 5. 🔄 Evoformer (48 blocks)
|
| 923 |
+
- A **deep learning module** that refines representations:
|
| 924 |
+
- **MSA representation** 🧱
|
| 925 |
+
- **Pair representation** 🧱 (r,c)
|
| 926 |
+
|
| 927 |
+
## 6. 🧱 Structure Module (8 blocks)
|
| 928 |
+
- Converts the representations into:
|
| 929 |
+
- **Single representation** (r,c)
|
| 930 |
+
- **Pair representation** (r,c)
|
| 931 |
+
|
| 932 |
+
## 7. 🧬 3D Structure Prediction
|
| 933 |
+
- The structure module predicts the **3D protein structure**.
|
| 934 |
+
- **Confidence levels**:
|
| 935 |
+
- 🔵 *High confidence*
|
| 936 |
+
- 🟠 *Low confidence*
|
| 937 |
+
|
| 938 |
+
## 8. ♻️ Recycling (Three Times)
|
| 939 |
+
- The model **recycles** its output up to three times to refine the prediction.
|
| 940 |
+
|
| 941 |
+
## 9. 📚 Reference
|
| 942 |
+
**Jumper, J., et al. (2021).** Highly Accurate Protein Structure Prediction with AlphaFold. *Nature.*
|
| 943 |
+
🔗 [Nature Publication Link](https://www.nature.com/articles/s41586-021-03819-2)
|
| 944 |
+
|
| 945 |
"""
|
| 946 |
st.sidebar.markdown(markdownPapers)
|
| 947 |
|