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Update app.py
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app.py
CHANGED
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@@ -140,7 +140,7 @@ def fold_protein_wpdb(test_protein, pdb_path):
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with open(pdb_path, "w") as f:
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f.write("".join(pdb))
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html = molecule(pdb_path)
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return html
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def load_protein_sequences(fasta_file):
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protein_sequences = {}
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@@ -165,22 +165,6 @@ iface = gr.Interface(
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]
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)
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# with gr.Blocks() as demo1:
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# input_seqs = gr.File(label="FASTA File With Protein Sequences")
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# @gr.render(inputs=input_seqs)
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# def show_split(inputfile):
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# if inputfile is None:
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# gr.Markdown("## No Input Provided")
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# else:
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# seqs = load_protein_sequences(inputfile)
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# print("Loaded sequences")
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# for seq in seqs:
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# pdb_path = f'{seq.replace(" ", "_").replace(",","")}.pdb'
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# html, pdb = fold_protein_wpdb(seqs[seq], pdb_path)
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# print(f"Prediction for {seq} is over")
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# gr.HTML(html, label=f"{seq} structural representation")
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# Molecule3D(pdb, label=f"{seq} molecular representation")
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with gr.Blocks() as demo1:
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input_seqs = gr.File(label="FASTA File With Protein Sequences")
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@gr.render(inputs=input_seqs)
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@@ -192,10 +176,11 @@ with gr.Blocks() as demo1:
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print("Loaded sequences")
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for seq in seqs:
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pdb_path = f'{seq.replace(" ", "_").replace(",","")}.pdb'
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html =
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print(f"Prediction for {seq} is over")
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gr.HTML(html, label=f"{seq} structural representation")
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demo = gr.TabbedInterface([iface, demo1], ["Single Protein Structure Prediction", "Bulk Protein Structure Prediction"])
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demo.launch(server_name="0.0.0.0", share=False)
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with open(pdb_path, "w") as f:
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f.write("".join(pdb))
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html = molecule(pdb_path)
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return html
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def load_protein_sequences(fasta_file):
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protein_sequences = {}
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]
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)
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with gr.Blocks() as demo1:
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input_seqs = gr.File(label="FASTA File With Protein Sequences")
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@gr.render(inputs=input_seqs)
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print("Loaded sequences")
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for seq in seqs:
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pdb_path = f'{seq.replace(" ", "_").replace(",","")}.pdb'
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html, pdb = fold_protein_wpdb(seqs[seq], pdb_path)
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print(f"Prediction for {seq} is over")
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gr.HTML(html, label=f"{seq} structural representation")
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demo = gr.TabbedInterface([iface, demo1], ["Single Protein Structure Prediction", "Bulk Protein Structure Prediction"])
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demo.launch(server_name="0.0.0.0", share=False)
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