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app.py
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@@ -5,45 +5,52 @@ import crystal_toolkit.components as ctc
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import dash
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import dash_mp_components as dmp
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import numpy as np
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import periodictable
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from crystal_toolkit.settings import SETTINGS
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from dash import dcc, html
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from dash.dependencies import Input, Output, State
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from dash_breakpoints import WindowBreakpoints
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from datasets import load_dataset
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from pymatgen.analysis.structure_analyzer import SpacegroupAnalyzer
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from pymatgen.core import Structure
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HF_TOKEN = os.environ.get("HF_TOKEN")
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top_k = 500
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# Load only the train split of the dataset
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display_columns = [
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"chemical_formula_descriptive",
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@@ -64,6 +71,8 @@ map_periodic_table = {v.symbol: k for k, v in enumerate(periodictable.elements)}
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n_elements = len(map_periodic_table)
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# Preprocessing step to create an index for the dataset
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train_df = dataset.select_columns(["chemical_formula_descriptive"]).to_pandas()
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pattern = re.compile(r"(?P<element>[A-Z][a-z]?)(?P<count>\d*)")
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@@ -367,8 +376,8 @@ def display_material(active_cell, selected_rows):
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row["cartesian_site_positions"],
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coords_are_cartesian=True,
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)
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if row[
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structure.add_site_property(
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sga = SpacegroupAnalyzer(structure)
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@@ -379,7 +388,9 @@ def display_material(active_cell, selected_rows):
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properties = {
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"Material ID": row["immutable_id"],
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"Formula": row["chemical_formula_descriptive"],
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"Energy per atom (eV/atom)": round(
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# "Band Gap (eV)": row["band_gap_direct"] or row["band_gap_indirect"], #future release
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"Total Magnetization (μB)": row["total_magnetization"],
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"Density (g/cm^3)": round(structure.density, 3),
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import dash
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import dash_mp_components as dmp
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import numpy as np
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import pandas as pd
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import periodictable
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from crystal_toolkit.settings import SETTINGS
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from dash import dcc, html
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from dash.dependencies import Input, Output, State
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from dash_breakpoints import WindowBreakpoints
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from datasets import concatenate_datasets, load_dataset
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from pymatgen.analysis.structure_analyzer import SpacegroupAnalyzer
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from pymatgen.core import Structure
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HF_TOKEN = os.environ.get("HF_TOKEN")
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top_k = 500
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splits = ["compatible_pbe", "compatible_pbesol", "compatible_scan", "non_compatible"]
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# Load only the train split of the dataset
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datasets = []
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for split in splits:
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dataset = load_dataset(
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"LeMaterial/leMat-Bulk",
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token=HF_TOKEN,
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split=split,
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columns=[
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"lattice_vectors",
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"species_at_sites",
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"cartesian_site_positions",
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"energy",
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# "energy_corrected", # not yet available in LeMat-Bulk
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"immutable_id",
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"elements",
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"functional",
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"stress_tensor",
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"magnetic_moments",
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"forces",
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# "band_gap_direct", #future release
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# "band_gap_indirect", #future release
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"dos_ef",
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# "charges", #future release
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"functional",
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"chemical_formula_reduced",
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"chemical_formula_descriptive",
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"total_magnetization",
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],
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)
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datasets.append(dataset)
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display_columns = [
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"chemical_formula_descriptive",
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n_elements = len(map_periodic_table)
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# Preprocessing step to create an index for the dataset
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# df = pd.concat([x.to_pandas() for x in datasets])
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dataset = concatenate_datasets(datasets)
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train_df = dataset.select_columns(["chemical_formula_descriptive"]).to_pandas()
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pattern = re.compile(r"(?P<element>[A-Z][a-z]?)(?P<count>\d*)")
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row["cartesian_site_positions"],
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coords_are_cartesian=True,
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)
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if row["magnetic_moments"]:
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structure.add_site_property("magmom", row["magnetic_moments"])
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sga = SpacegroupAnalyzer(structure)
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properties = {
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"Material ID": row["immutable_id"],
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"Formula": row["chemical_formula_descriptive"],
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"Energy per atom (eV/atom)": round(
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row["energy"] / len(row["species_at_sites"]), 3
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),
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# "Band Gap (eV)": row["band_gap_direct"] or row["band_gap_indirect"], #future release
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"Total Magnetization (μB)": row["total_magnetization"],
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"Density (g/cm^3)": round(structure.density, 3),
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