Datasets:
Create README.md
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README.md
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---
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language:
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- en
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---
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The dataset was extracted from antismash-db 4.0 postgresql dump, the corresponding description can be found here:
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https://antismash-db.secondarymetabolites.org/
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If you want to use it, please refer to the original licensing terms and properly cite the authors.
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Each line in .csv file corresponds to NRPS module, both with the monomer produced by it.
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Each module has a specific sequence of domains. Module possible structure is described in the literature.
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To clean the data, I referred to wiki definitions
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https://en.wikipedia.org/wiki/Nonribosomal_peptide#Modules
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Each line has the corresponding columns, if the column contains protein sequence, it means that module has the corresponding domain.
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The data are cleaned to keep only aminoacid monomers and corresponding D-aminoacids
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(it should be defined by the presence of Epimerization domain).
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