Commit
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ececc1a
1
Parent(s):
720d608
Update msynth.py
Browse files
msynth.py
CHANGED
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@@ -311,7 +311,33 @@ class msynth(datasets.GeneratorBasedBuilder):
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else:
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return "Not available for this raw file"
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def _generate_examples(self, files, name):
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if self.config.name == "device_data":
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@@ -350,37 +376,62 @@ class msynth(datasets.GeneratorBasedBuilder):
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if self.config.name == "segmentation_mask":
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data_dir = []
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for folder in files:
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tmp_dir = []
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tmp_dir = self.get_all_file_paths(os.path.join(folder, DATA_DIR[name]))
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data_dir = data_dir + tmp_dir
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res_dic = {}
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for word in _DENSITY:
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if word in path:
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breast_density = word
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pattern = rf"(\d+\.\d+)_{word}"
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match = re.search(pattern, path)
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matched_text = match.group(1)
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break
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res_dic["mass_radius"] = matched_text
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key += 1
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if self.config.name == "metadata":
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key = 0
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else:
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return "Not available for this raw file"
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def sort_file_paths(self, file_paths):
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digit_numbers = []
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for file_path in file_paths:
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for word in _DENSITY:
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if word in file_path:
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if self.config.name == "device-data":
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pattern = rf"{word}.(\d+\.)(\d+)"
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elif self.config.name == "segmentation-mask":
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pattern = rf"{word}.(\d+)"
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match = re.search(pattern, file_path)
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if self.config.name == "device-data":
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digit_numbers.append(int(match.group(2)))
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elif self.config.name == "segmentation-mask":
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digit_numbers.append(int(match.group(1)))
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break
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# Sort the list of numbers while keeping track of the original indices
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sorted_numbers_with_indices = sorted(enumerate(digit_numbers), key=lambda x: x[1])
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# Extract the sorted numbers and their original indices
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sorted_indices, sorted_numbers = zip(*sorted_numbers_with_indices)
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# Sort the file paths
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sorted_file_paths = [file_paths[i] for i in sorted_indices]
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return sorted_file_paths
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def _generate_examples(self, files, name):
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if self.config.name == "device_data":
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if self.config.name == "segmentation_mask":
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key = 0
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data_dir = []
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examples = []
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for folder in files:
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tmp_dir = []
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tmp_dir = self.get_all_file_paths(os.path.join(folder, DATA_DIR[name]))
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data_dir = data_dir + tmp_dir
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data_dir = self.sort_file_paths(data_dir)
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new_data_dir = [];
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count = 1;
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loc = 0;
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while loc < len(data_dir):
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if count % 2 == 1:
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new_data_dir.append(data_dir[loc])
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loc += 1
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else:
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new_data_dir.append('None')
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count += 1
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for path in new_data_dir:
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res_dic = {}
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if path == "None":
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res_dic["Raw"] = "None"
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res_dic["mhd"] = "None"
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res_dic["loc"] = "None"
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res_dic["density"] = "None"
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res_dic["mass_radius"] = "None"
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else:
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for word in _DENSITY:
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if word in path:
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breast_density = word
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pattern = rf"(\d+\.\d+)_{word}"
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match = re.search(pattern, path)
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matched_text = match.group(1)
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break
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# Get image id to filter the respective row of the csv
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image_id = os.path.basename(path)
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# Use os.path.splitext() to split the filename into root and extension
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root, extension = os.path.splitext(image_id)
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# Get the extension without the dot
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image_labels = extension.lstrip(".")
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res_dic["Raw"] = path
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res_dic["mhd"] = self.get_support_file_path(path, "mhd")
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res_dic["loc"] = self.get_support_file_path(path, "loc")
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res_dic["density"] = breast_density
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res_dic["mass_radius"] = matched_text
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examples.append(res_dic)
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for example in examples:
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yield key, {**example}
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key += 1
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examples = []
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if self.config.name == "metadata":
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key = 0
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