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upload hub_repos/msh_wsd/README.md to hub from bigbio repo
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README.md
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---
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language:
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- en
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license: other
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license_bigbio_shortname: UMLS_LICENSE
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pretty_name: MSH WSD
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---
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# Dataset Card for MSH WSD
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## Dataset Description
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- **Homepage:** https://lhncbc.nlm.nih.gov/ii/areas/WSD/collaboration.html
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- **Pubmed:** True
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- **Public:** False
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- **Tasks:** Named Entity Disambiguation
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Evaluation of Word Sense Disambiguation methods (WSD) in the biomedical domain is difficult because the available
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resources are either too small or too focused on specific types of entities (e.g. diseases or genes). We have
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developed a method that can be used to automatically develop a WSD test collection using the Unified Medical Language
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System (UMLS) Metathesaurus and the manual MeSH indexing of MEDLINE. The resulting dataset is called MSH WSD and
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consists of 106 ambiguous abbreviations, 88 ambiguous terms and 9 which are a combination of both, for a total of 203
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ambiguous words. Each instance containing the ambiguous word was assigned a CUI from the 2009AB version of the UMLS.
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For each ambiguous term/abbreviation, the data set contains a maximum of 100 instances per sense obtained from
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MEDLINE; totaling 37,888 ambiguity cases in 37,090 MEDLINE citations.
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## Citation Information
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```
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@article{jimeno2011exploiting,
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title={Exploiting MeSH indexing in MEDLINE to generate a data set for word sense disambiguation},
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author={Jimeno-Yepes, Antonio J and McInnes, Bridget T and Aronson, Alan R},
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journal={BMC bioinformatics},
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volume={12},
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number={1},
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pages={1--14},
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year={2011},
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publisher={BioMed Central}
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}
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```
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