Datasets:

Languages:
English
License:
gabrielaltay commited on
Commit
763d2fa
·
1 Parent(s): 7f81903

upload hub_repos/msh_wsd/README.md to hub from bigbio repo

Browse files
Files changed (1) hide show
  1. README.md +46 -0
README.md ADDED
@@ -0,0 +1,46 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+
2
+ ---
3
+ language:
4
+ - en
5
+ license: other
6
+ license_bigbio_shortname: UMLS_LICENSE
7
+ pretty_name: MSH WSD
8
+ ---
9
+
10
+
11
+ # Dataset Card for MSH WSD
12
+
13
+ ## Dataset Description
14
+
15
+ - **Homepage:** https://lhncbc.nlm.nih.gov/ii/areas/WSD/collaboration.html
16
+ - **Pubmed:** True
17
+ - **Public:** False
18
+ - **Tasks:** Named Entity Disambiguation
19
+
20
+
21
+ Evaluation of Word Sense Disambiguation methods (WSD) in the biomedical domain is difficult because the available
22
+ resources are either too small or too focused on specific types of entities (e.g. diseases or genes). We have
23
+ developed a method that can be used to automatically develop a WSD test collection using the Unified Medical Language
24
+ System (UMLS) Metathesaurus and the manual MeSH indexing of MEDLINE. The resulting dataset is called MSH WSD and
25
+ consists of 106 ambiguous abbreviations, 88 ambiguous terms and 9 which are a combination of both, for a total of 203
26
+ ambiguous words. Each instance containing the ambiguous word was assigned a CUI from the 2009AB version of the UMLS.
27
+ For each ambiguous term/abbreviation, the data set contains a maximum of 100 instances per sense obtained from
28
+ MEDLINE; totaling 37,888 ambiguity cases in 37,090 MEDLINE citations.
29
+
30
+
31
+
32
+ ## Citation Information
33
+
34
+ ```
35
+ @article{jimeno2011exploiting,
36
+ title={Exploiting MeSH indexing in MEDLINE to generate a data set for word sense disambiguation},
37
+ author={Jimeno-Yepes, Antonio J and McInnes, Bridget T and Aronson, Alan R},
38
+ journal={BMC bioinformatics},
39
+ volume={12},
40
+ number={1},
41
+ pages={1--14},
42
+ year={2011},
43
+ publisher={BioMed Central}
44
+ }
45
+
46
+ ```