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---
language:
- en
bigbio_language:
- English
license: other
multilinguality: monolingual
bigbio_license_shortname: PUBLIC_DOMAIN_MARK_1p0
pretty_name: ChemProt
homepage: https://biocreative.bioinformatics.udel.edu/tasks/biocreative-vi/track-5/
bigbio_pubmed: true
bigbio_public: true
bigbio_tasks:
- RELATION_EXTRACTION
- NAMED_ENTITY_RECOGNITION
dataset_info:
- config_name: chemprot_bigbio_kb
features:
- name: id
dtype: string
- name: document_id
dtype: string
- name: passages
list:
- name: id
dtype: string
- name: type
dtype: string
- name: text
sequence: string
- name: offsets
sequence:
list: int32
- name: entities
list:
- name: id
dtype: string
- name: type
dtype: string
- name: text
sequence: string
- name: offsets
sequence:
list: int32
- name: normalized
list:
- name: db_name
dtype: string
- name: db_id
dtype: string
- name: events
list:
- name: id
dtype: string
- name: type
dtype: string
- name: trigger
struct:
- name: text
sequence: string
- name: offsets
sequence:
list: int32
- name: arguments
list:
- name: role
dtype: string
- name: ref_id
dtype: string
- name: coreferences
list:
- name: id
dtype: string
- name: entity_ids
sequence: string
- name: relations
list:
- name: id
dtype: string
- name: type
dtype: string
- name: arg1_id
dtype: string
- name: arg2_id
dtype: string
- name: normalized
list:
- name: db_name
dtype: string
- name: db_id
dtype: string
splits:
- name: sample
num_bytes: 174378
num_examples: 50
- name: train
num_bytes: 3509825
num_examples: 1020
- name: test
num_bytes: 2838045
num_examples: 800
- name: validation
num_bytes: 2098255
num_examples: 612
download_size: 3644874
dataset_size: 8620503
- config_name: chemprot_full_source
features:
- name: pmid
dtype: string
- name: text
dtype: string
- name: entities
sequence:
- name: id
dtype: string
- name: type
dtype: string
- name: text
dtype: string
- name: offsets
sequence: int64
- name: relations
sequence:
- name: type
dtype: string
- name: arg1
dtype: string
- name: arg2
dtype: string
splits:
- name: sample
num_bytes: 159878
num_examples: 50
- name: train
num_bytes: 3161241
num_examples: 1020
- name: test
num_bytes: 2550891
num_examples: 800
- name: validation
num_bytes: 1902042
num_examples: 612
download_size: 2938603
dataset_size: 7774052
- config_name: chemprot_shared_task_eval_source
features:
- name: pmid
dtype: string
- name: text
dtype: string
- name: entities
sequence:
- name: id
dtype: string
- name: type
dtype: string
- name: text
dtype: string
- name: offsets
sequence: int64
- name: relations
sequence:
- name: type
dtype: string
- name: arg1
dtype: string
- name: arg2
dtype: string
splits:
- name: sample
num_bytes: 157609
num_examples: 50
- name: train
num_bytes: 3109953
num_examples: 1020
- name: test
num_bytes: 2499388
num_examples: 800
- name: validation
num_bytes: 1876378
num_examples: 612
download_size: 2924370
dataset_size: 7643328
configs:
- config_name: chemprot_bigbio_kb
data_files:
- split: sample
path: chemprot_bigbio_kb/sample-*
- split: train
path: chemprot_bigbio_kb/train-*
- split: test
path: chemprot_bigbio_kb/test-*
- split: validation
path: chemprot_bigbio_kb/validation-*
- config_name: chemprot_full_source
data_files:
- split: sample
path: chemprot_full_source/sample-*
- split: train
path: chemprot_full_source/train-*
- split: test
path: chemprot_full_source/test-*
- split: validation
path: chemprot_full_source/validation-*
default: true
- config_name: chemprot_shared_task_eval_source
data_files:
- split: sample
path: chemprot_shared_task_eval_source/sample-*
- split: train
path: chemprot_shared_task_eval_source/train-*
- split: test
path: chemprot_shared_task_eval_source/test-*
- split: validation
path: chemprot_shared_task_eval_source/validation-*
---
# Dataset Card for ChemProt
## Dataset Description
- **Homepage:** https://biocreative.bioinformatics.udel.edu/tasks/biocreative-vi/track-5/
- **Pubmed:** True
- **Public:** True
- **Tasks:** RE,NER
The BioCreative VI Chemical-Protein interaction dataset identifies entities of
chemicals and proteins and their likely relation to one other. Compounds are
generally agonists (activators) or antagonists (inhibitors) of proteins.
## Citation Information
```
@article{DBLP:journals/biodb/LiSJSWLDMWL16,
author = {Krallinger, M., Rabal, O., Lourenço, A.},
title = {Overview of the BioCreative VI chemical-protein interaction Track},
journal = {Proceedings of the BioCreative VI Workshop,},
volume = {141-146},
year = {2017},
url = {https://biocreative.bioinformatics.udel.edu/tasks/biocreative-vi/track-5/},
doi = {},
biburl = {},
bibsource = {}
}
```
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